Best Reviews logo
Best Reviews may receive compensation for its content through paid collaborations. See how we sustain our work & review products.
Best Online Accounting Software for Nonprofits

Best Online Accounting Software for Nonprofits

By Mary P. Mary P. — Verified by Saskia H. Saskia H. — Last updated: February 12, 2025 — (0)
Table of contents

Where most businesses are built with economic value in mind, nonprofit organizations are all about social impact. Driven by the goal of helping others instead of money, these businesses are often community-owned and funded by donations. This comes with a whole host of challenges.

Nonprofits face budget constraints due to unreliable funding, and managing donors effectively is essential to keeping them afloat. Plus, they have to follow strict legal protocols to avoid paying taxes.

Best Online Accounting Software for Nonprofits

However, modern technology has revolutionized accounting software for nonprofits. These platforms can provide features beyond those needed by regular companies, such as clear and accurate financial reports, automatic regulation compliance, and donation tracking.

Join us as we reveal key tips for finding the right solution, our recommendations for free online accounting platforms for nonprofits, and how to implement this software into your workflow.

Best online accounting software for nonprofits

Editors' choice
Wave Accounting logo
Editor's rating:
(3.5)
Free of charge
Most important features are present
Payment with credit/debit card option
Good applications
Small businesses
QuickBooks Online logo
Editor's rating:
(4)
Very good user interface
Over 300 integration options
Different subscriptions with different features
Good Android and iOS apps
Integrations
Xero logo
Editor's rating:
(4.5)
Great mobile app
Affordable pricing
Responsive customer support
Over 400 third-party apps
Free
GnuCash logo
Editor's rating:
(4)
Free and open source
Double-entry accounting
Customizable reports
Multi-currency support
Wave Accounting
Editors' choice: Wave Accounting
Editor's rating:
Reviews
  • Free of charge
  • Most important features are present
  • Payment with credit/debit card option
  • Good applications
  • Lacking or pay-only features and support
  • Slow processing
  • Few software integrations
Starting price: $0.30/unit Visit Wave Accounting
Screenshots
Offers
Only $2 per employee a month
Three-month support for just $49
Free complete accounting solution
30-day risk-free trial of paying features
QuickBooks Online
Small businesses: QuickBooks Online
Editor's rating:
Reviews
  • Very good user interface
  • Over 300 integration options
  • Different subscriptions with different features
  • Good Android and iOS apps
  • Trial period and money-back guarantee
  • Certain essential features are add-ons
  • Long waiting time for telephone assistance
Starting price: $15/mo Visit QuickBooks Online
Screenshots
Offers
50% discount on QuickBooks Online first 3 months
20% discount on Simple Start
Free 30-day trial of QuickBooks Online
Risk-free 60-day trial of QuickBooks Online
Xero
Integrations: Xero
Editor's rating:
Reviews
  • Great mobile app
  • Affordable pricing
  • Responsive customer support
  • Over 400 third-party apps
  • Payroll support could be better
Starting price: $9/mo Visit Xero
Screenshots
Offers
30% discount for the first six months
Free 30-Day trial Of Xero
GnuCash
Free: GnuCash
Editor's rating:
Reviews
  • Free and open source
  • Double-entry accounting
  • Customizable reports
  • Multi-currency support
  • No mobile or web app
  • Interface isn't user-friendly
  • No native cloud integration

Key features to consider in not-for-profit accounting software

While ease of use and scalability are key considerations with any software, certain online accounting features specifically benefit nonprofit organizations and should be prioritized:

Fund accounting and budget management đź’°

It’s common for not-for-profit companies to receive general funds that can be spent however the organization sees fit, alongside restricted funds that must be used for specific purposes. Plenty of financial software offers fund tracking designed for nonprofits, keeping accounts separate and organized.

With limited and unreliable finances, nonprofits need to budget meticulously and can benefit hugely from digital tools that plan, track, and analyze projected budgets against actual expenditures.

Donation and membership tracking 🔍

There are plenty of solutions for nonprofits that aid in managing donors, fundraising, and bookkeeping. However, the accounting software chosen must integrate seamlessly with all your core software, from CRM to fundraising platforms.

Specialized reporting đź“„

Delivering detailed reports on how donors’ funds have been spent is essential for complete transparency. Nonprofit accounting software generates fund balance, income and expense, grant spending, and grant compliance reports, which are crucial for staying compliant with donor restrictions and regulatory bodies.

Volunteer expense tracking đź’µ

Charities and similar organizations rely on volunteers, and although this removes the hassle of payroll, there are still protocols to carefully follow. Accounting systems that track volunteer hours and expense reimbursement make administrators’ lives much easier.

Best free accounting software for nonprofits

Free accounting programs are certainly appealing to nonprofits, especially if funds are limited. While free budget software is a fantastic option, there are some downsides:

Pros
  • No up-front costs
  • Simple, easy-to-use interface
  • Essential accounting features
Cons
  • Reduced integrations
  • Advanced features unavailable
  • Hidden costs
  • Basic customer support

Free accounting software may be the way to go if all you need are the basics, like expense tracking, simple reporting, and budgeting tools. However, you should verify what you need, as advanced features like specialized reporting, donation management, and volunteer expense tracking are usually locked behind a paywall. With a freemium account, you may not realize until too late that additional vital features like integrations involve hidden fees.

Key considerations for free bookkeeping software

There’s no need to rule out free or freemium subscriptions, but just keep in mind three crucial tips before signing up:

  1. Data security: Up-to-date data encryption and security protocols are non-negotiable. The last thing nonprofits need is leaked sensitive financial information.
  2. Integrations: Even if your company uses no other business software now, it will in the future. Ensure that your chosen solution integrates with at least CRM, donor management, and payroll platforms.
  3. Scalability: A free account may work for you now, but you may want to scale up later, so ensure it’s possible to add advanced features.

Consultants analyzing company financial report

Our best free accounting software for nonprofits recommendations are:

  • Wave Accounting – one of the only genuinely free options available, highly accessible, with plenty of zero-cost features.
  • QuickBooks Online – no free plan available, but the 30-day free trial is generous and packed with helpful tools.
  • GnuCash – free open source software that’s highly customizable and supports fund accounting.

How to evaluate and compare nonprofit accounting programs

1

Assess your company’s size and complexity. Where smaller organizations can get away with free or low-cost solutions, mid and large-sized nonprofits will need the features only found in paid subscriptions.

2

Check reporting and compliance capabilities. Nonprofit-specific reporting, which includes tax forms and donor report generation, is a must. This is one of the main reasons for using accounting software, so don’t skip on researching the details.

3

Evaluate your budget and your must-haves. Weigh up how much your company can afford to spend on accounting software and which features are worth shelling out for.

Online accounting software implementation best practices for nonprofits

Once you’ve decided on your accounting software for a nonprofit organization, there are a few best practices to kick things off right.

Before using the new platform, ensure all important data, from financial reports to volunteer expense records, is backed up and carefully migrated into the new system.

Next, categorize restricted and unrestricted funds, expenses, and other data in a chart of accounts. This will ensure that everything is tracked and monitored accurately from the beginning.

Once the new workflow has been tested, it’s time to onboard employees and volunteers following a well-designed training plan. Getting this right from day one will save you time and hassle further down the line.

Accountant working on a business analytics

As you get to know the platform better, you’ll see how to best use automation. With charity accounting software, it’s straightforward to set up automatic billing, invoicing, and report scheduling.

After the rollout is complete and the software is fully in action, remember to periodically conduct internal audits to maintain accuracy and transparency in financial records. Keep checking in with team members to see how they find the new system and if any tweaks are necessary.

Key takeaways for finding the right accounting software for nonprofits

There may seem like too many online accounting solutions to choose from, but looking for nonprofit-specific features can narrow down the search significantly. Plenty of free and low-cost services, like Wave Accounting and GnuCash, can take care of core accounting processes for small organizations. If your company is scaling up and your demands are increasing, a Quickbooks Online or Xero subscription can unlock all kinds of advanced tools.

The best way to know which bookkeeping software is right for you is to test-drive various products using free trials and money-back guarantees. However, always look for specialized tools to guarantee that your not-for-profit needs are catered to.

Why you can trust us

The Best Reviews team researches and tests all products first-hand. We've been reviewing products and services since 2012 and are proud to only publish human-created content.

User feedback

 Leave a reply

Your email address will not be published. Required fields are marked *


Best Reviews

Best Reviews may receive compensation for its content through paid collaborations and/or affiliate links. Learn more about how we sustain our work and review products.

©2012-2025 Best Reviews, a clovio brand – All rights reserved
Privacy policy · Cookie policy · Terms of use · Partnerships · Contact us